Language features
This reference is structured as a series of examples.
The intended audience is primarily:
researchers
software developers
that already have some understanding of how the ehrQL works.
Info
Please refer to the introduction and tutorial documentation sections
if you need more explanation of the underlying concepts behind ehrQL .
How the examples work
Each individual example demonstrates a specific ehrQL feature in isolation.
Every example here consists of:
Headings and subheadings that summarise the feature being demonstrated.
A small example data input table containing entirely fictitious variables and values.
The table has a single-letter name referred to throughout the example
e for event-level tablep for patient-level table.
The columns of input tables use a name constructed from a single letter with a number
to create an identifier — for example, i1.
The single letter in the identifier refers to the column's data type:
a b column contains Boolean values
a c column contains electronic health record codes
(the codes used in this reference are fictitious, for example: abc)
a d column contains dates
an i column contains integers
an s column contains strings
Both table and column names are written with code formatting throughout this reference.
An ehrQL query that extracts some data from the example table.
Like the table names, ehrQL queries are displayed here with code formatting.
The resulting output from the ehrQL query,
displayed as another table,
to demonstrate the query's effect
1 Filtering an event frame
1.1 Including rows
1.1.1 Where with column
This example makes use of an event-level table named e containing the following data:
patient
i1
b1
1
101
T
1
102
T
1
103
2
201
T
2
202
2
203
F
3
301
3
302
F
e . where ( e . b1 ) . i1 . sum_for_patient ()
patient
value
1
203
2
201
3
1.1.2 Where with expr
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
1
101
111
1
102
112
1
103
113
2
201
211
2
202
212
2
203
213
3
301
e . where (( e . i1 + e . i2 ) < 413 ) . i1 . sum_for_patient ()
patient
value
1
306
2
201
3
1.1.3 Where with constant true
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
2
201
e . where ( True ) . count_for_patient ()
1.1.4 Where with constant false
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
2
201
e . where ( False ) . count_for_patient ()
1.1.5 Chain multiple wheres
This example makes use of an event-level table named e containing the following data:
patient
i1
b1
1
1
T
1
2
T
1
3
F
e . where ( e . i1 >= 2 ) . where ( e . b1 ) . i1 . sum_for_patient ()
1.2 Excluding rows
1.2.1 Except where with column
This example makes use of an event-level table named e containing the following data:
patient
i1
b1
1
101
T
1
102
T
1
103
2
201
T
2
202
2
203
F
3
301
T
3
302
T
e . except_where ( e . b1 ) . i1 . sum_for_patient ()
patient
value
1
103
2
405
3
1.2.2 Except where with expr
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
1
101
111
1
102
112
1
103
113
2
201
211
2
202
212
2
203
213
3
301
e . except_where (( e . i1 + e . i2 ) < 413 ) . i1 . sum_for_patient ()
patient
value
1
2
405
3
301
1.2.3 Except where with constant true
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
2
201
e . except_where ( True ) . count_for_patient ()
1.2.4 Except where with constant false
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
2
201
e . except_where ( False ) . count_for_patient ()
2 Picking one row for each patient from an event frame
2.1 Picking the first or last row for each patient
2.1.1 Sort by column pick first
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
1
103
2
203
2
202
2
201
e . sort_by ( e . i1 ) . first_for_patient () . i1
patient
value
1
101
2
201
2.1.2 Sort by column pick last
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
1
103
2
203
2
202
2
201
e . sort_by ( e . i1 ) . last_for_patient () . i1
patient
value
1
103
2
203
2.2 Sort by more than one column and pick the first or last row for each patient
2.2.1 Sort by multiple columns pick first
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
1
101
3
1
102
2
1
102
1
2
203
1
2
202
2
2
202
3
e . sort_by ( e . i1 , e . i2 ) . first_for_patient () . i2
2.2.2 Sort by multiple columns pick last
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
1
101
3
1
102
2
1
102
1
2
203
1
2
202
2
2
202
3
e . sort_by ( e . i1 , e . i2 ) . last_for_patient () . i2
2.3 Picking the first or last row for each patient where a column contains NULLs
2.3.1 Sort by column with nulls and pick first
This example makes use of an event-level table named e containing the following data:
patient
i1
1
1
102
1
103
2
203
2
202
2
e . sort_by ( e . i1 ) . first_for_patient () . i1
2.3.2 Sort by column with nulls and pick last
This example makes use of an event-level table named e containing the following data:
patient
i1
1
1
102
1
103
2
203
2
202
2
e . sort_by ( e . i1 ) . last_for_patient () . i1
patient
value
1
103
2
203
2.4 Mixing the order of sort_by and where operations
2.4.1 Sort by before where
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
1
101
1
1
102
2
1
103
2
2
203
1
2
202
2
2
201
2
e . sort_by ( e . i1 ) . where ( e . i1 > 102 ) . first_for_patient () . i1
patient
value
1
103
2
201
2.4.2 Sort by interleaved with where
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
1
101
1
1
102
2
1
103
2
2
203
1
2
202
2
2
201
2
e . sort_by ( e . i1 ) . where ( e . i2 > 1 ) . sort_by ( e . i2 ) . first_for_patient () . i1
patient
value
1
102
2
201
2.5 Pointless sort operations that we should nevertheless handle without error
2.5.1 Sort by patient series
This example makes use of an event-level table named e and a patient-level table named p containing the following data:
e . sort_by (
# Patient series
p . i1 ,
# Literal constant
0 ,
)
. first_for_patient ()
. i1
patient
value
1
101
2
201
3 Aggregating event and patient frames
3.1 Determining whether a row exists for each patient
3.1.1 Exists for patient on event frame
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
returns the following patient series:
patient
value
1
T
2
T
3
F
3.1.2 Exists for patient on patient frame
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
returns the following patient series:
patient
value
1
T
2
T
3
T
3.2 Counting the rows for each patient
3.2.1 Count for patient on event frame
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
returns the following patient series:
patient
value
1
2
2
1
3
0
3.2.2 Count for patient on patient frame
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
returns the following patient series:
patient
value
1
1
2
1
3
1
4 Aggregating event series
4.1 Minimum and maximum aggregations
4.1.1 Minimum for patient
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
1
103
2
201
2
3
e . i1 . minimum_for_patient ()
patient
value
1
101
2
201
3
4.1.2 Maximum for patient
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
1
103
2
201
2
3
e . i1 . maximum_for_patient ()
patient
value
1
103
2
201
3
4.2 Sum aggregation
4.2.1 Sum for patient
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
1
103
2
201
2
2
203
3
returns the following patient series:
patient
value
1
306
2
404
3
4.3 Mean aggregation
4.3.1 Mean for patient integer
This example makes use of an event-level table named e containing the following data:
patient
i1
f1
1
1
1.1
1
2
2.1
1
3
3.1
2
2
2
2.1
2
3
3.1
3
returns the following patient series:
patient
value
1
2.0
2
2.5
3
4.3.2 Mean for patient float
This example makes use of an event-level table named e containing the following data:
patient
i1
f1
1
1
1.1
1
2
2.1
1
3
3.1
2
2
2
2.1
2
3
3.1
3
returns the following patient series:
patient
value
1
2.1
2
2.6
3
4.4 Count distinct aggregation
4.4.1 Count distinct for patient integer
This example makes use of an event-level table named e containing the following data:
patient
i1
f1
s1
d1
1
101
1.1
a
2020-01-01
1
102
1.2
b
2020-01-02
1
103
1.5
c
2020-01-03
2
201
2.1
a
2020-02-01
2
201
2.1
a
2020-02-01
2
203
2.5
b
2020-02-02
3
301
3.1
a
2020-03-01
3
301
3.1
a
2020-03-01
3
3
4
e . i1 . count_distinct_for_patient ()
patient
value
1
3
2
2
3
1
4
0
4.4.2 Count distinct for patient float
This example makes use of an event-level table named e containing the following data:
patient
i1
f1
s1
d1
1
101
1.1
a
2020-01-01
1
102
1.2
b
2020-01-02
1
103
1.5
c
2020-01-03
2
201
2.1
a
2020-02-01
2
201
2.1
a
2020-02-01
2
203
2.5
b
2020-02-02
3
301
3.1
a
2020-03-01
3
301
3.1
a
2020-03-01
3
3
4
e . f1 . count_distinct_for_patient ()
patient
value
1
3
2
2
3
1
4
0
4.4.3 Count distinct for patient string
This example makes use of an event-level table named e containing the following data:
patient
i1
f1
s1
d1
1
101
1.1
a
2020-01-01
1
102
1.2
b
2020-01-02
1
103
1.5
c
2020-01-03
2
201
2.1
a
2020-02-01
2
201
2.1
a
2020-02-01
2
203
2.5
b
2020-02-02
3
301
3.1
a
2020-03-01
3
301
3.1
a
2020-03-01
3
3
4
e . s1 . count_distinct_for_patient ()
patient
value
1
3
2
2
3
1
4
0
4.4.4 Count distinct for patient date
This example makes use of an event-level table named e containing the following data:
patient
i1
f1
s1
d1
1
101
1.1
a
2020-01-01
1
102
1.2
b
2020-01-02
1
103
1.5
c
2020-01-03
2
201
2.1
a
2020-02-01
2
201
2.1
a
2020-02-01
2
203
2.5
b
2020-02-02
3
301
3.1
a
2020-03-01
3
301
3.1
a
2020-03-01
3
3
4
e . s1 . count_distinct_for_patient ()
patient
value
1
3
2
2
3
1
4
0
5 Combining series
5.1 Combining two patient series
5.1.1 Patient series and patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
102
2
201
202
returns the following patient series:
patient
value
1
203
2
403
5.2 Combining a patient series with a value
5.2.1 Patient series and value
This example makes use of a patient-level table named p containing the following data:
returns the following patient series:
patient
value
1
102
2
202
5.2.2 Value and patient series
This example makes use of a patient-level table named p containing the following data:
returns the following patient series:
patient
value
1
102
2
202
5.3 Combining two event series
5.3.1 Event series and event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
s1
1
101
111
b
1
102
112
a
2
201
211
b
2
202
212
a
( e . i1 + e . i2 ) . sum_for_patient ()
patient
value
1
426
2
826
5.3.2 Event series and sorted event series
The sort order of the underlying event series does not affect their combination.
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
s1
1
101
111
b
1
102
112
a
2
201
211
b
2
202
212
a
( e . i1 + e . sort_by ( e . s1 ) . i2 ) . minimum_for_patient ()
patient
value
1
212
2
412
5.4 Combining an event series with a patient series
5.4.1 Event series and patient series
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
patient
i1
1
111
1
112
2
211
2
212
( e . i1 + p . i1 ) . sum_for_patient ()
patient
value
1
425
2
825
5.4.2 Patient series and event series
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
patient
i1
1
111
1
112
2
211
2
212
( p . i1 + e . i1 ) . sum_for_patient ()
patient
value
1
425
2
825
5.5 Combining an event series with a value
5.5.1 Event series and value
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
2
201
2
202
( e . i1 + 1 ) . sum_for_patient ()
patient
value
1
205
2
405
5.5.2 Value and event series
This example makes use of an event-level table named e containing the following data:
patient
i1
1
101
1
102
2
201
2
202
( 1 + e . i1 ) . sum_for_patient ()
patient
value
1
205
2
405
6 Operations on all series
6.1 Testing for equality
6.1.1 Equals
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
101
2
201
202
3
301
4
returns the following patient series:
patient
value
1
T
2
F
3
4
6.1.2 Not equals
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
101
2
201
202
3
301
4
returns the following patient series:
patient
value
1
F
2
T
3
4
6.1.3 Is null
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
101
2
201
202
3
301
4
returns the following patient series:
patient
value
1
F
2
F
3
F
4
T
6.1.4 Is not null
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
101
2
201
202
3
301
4
returns the following patient series:
patient
value
1
T
2
T
3
T
4
F
6.2 Testing for containment
6.2.1 Is in
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
101
2
201
3
301
4
returns the following patient series:
patient
value
1
T
2
F
3
T
4
6.2.2 Is not in
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
101
2
201
3
301
4
p . i1 . is_not_in ([ 101 , 301 ])
patient
value
1
F
2
T
3
F
4
6.2.3 Is in empty list
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
101
2
201
3
301
4
returns the following patient series:
patient
value
1
F
2
F
3
F
4
F
6.2.4 Is not in empty list
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
101
2
201
3
301
4
returns the following patient series:
patient
value
1
T
2
T
3
T
4
T
6.3 Testing for containment in another series
6.3.1 Is in series
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
patient
i1
1
101
2
201
3
301
4
5
501
6
patient
i1
1
101
2
201
2
203
2
301
3
333
3
334
4
4
401
5
5
101
returns the following patient series:
patient
value
1
T
2
T
3
F
4
5
F
6
F
6.3.2 Is not in series
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
patient
i1
1
101
2
201
3
301
4
5
501
6
patient
i1
1
101
2
201
2
203
2
301
3
333
3
334
4
4
401
5
5
101
returns the following patient series:
patient
value
1
F
2
F
3
T
4
5
T
6
T
6.4 Map from one set of values to another
6.4.1 Map values
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
101
2
201
3
301
4
p . i1 . map_values ({ 101 : "a" , 201 : "b" , 301 : "a" }, default = "c" )
patient
value
1
a
2
b
3
a
4
c
6.5 Replace missing values
6.5.1 When null then integer column
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
101
2
201
3
301
4
returns the following patient series:
patient
value
1
101
2
201
3
301
4
0
6.5.2 When null then boolean column
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
101
2
201
3
301
4
p . i1 . is_in ([ 101 , 201 ]) . when_null_then ( False )
patient
value
1
T
2
T
3
F
4
F
6.6 Minimum and maximum aggregations across Patient series
6.6.1 Maximum of two integer patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
patient
value
1
112
2
211
3
6.6.2 Minimum of two integer patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
patient
value
1
101
2
211
3
6.6.3 Minimum of two integer patient series and a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( p . i1 , p . i2 , 150 )
patient
value
1
101
2
150
3
150
6.6.4 Maximum of two integer patient series and a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( p . i1 , p . i2 , 150 )
patient
value
1
150
2
211
3
150
6.6.5 Minimum of two date patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
patient
value
1
2001-01-01
2
2021-01-01
3
6.6.6 Maximum of two date patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
patient
value
1
2012-12-12
2
2021-01-01
3
6.6.7 Minimum of two date patient series and datetime a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( p . d1 , p . d2 , date ( 2015 , 5 , 5 ))
patient
value
1
2001-01-01
2
2015-05-05
3
2015-05-05
6.6.8 Maximum of two date patient series and datetime a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( p . d1 , p . d2 , date ( 2015 , 5 , 5 ))
patient
value
1
2015-05-05
2
2021-01-01
3
2015-05-05
6.6.9 Minimum of two date patient series and string a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( p . d1 , p . d2 , "2015-05-05" )
patient
value
1
2001-01-01
2
2015-05-05
3
2015-05-05
6.6.10 Maximum of two date patient series and string a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( p . d1 , p . d2 , "2015-05-05" )
patient
value
1
2015-05-05
2
2021-01-01
3
2015-05-05
6.6.11 Maximum of two float patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
patient
value
1
1.12
2
2.11
3
6.6.12 Minimum of two float patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
patient
value
1
1.01
2
2.11
3
6.6.13 Minimum of two float patient series and a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( p . f1 , p . f2 , 1.5 )
patient
value
1
1.01
2
1.5
3
1.5
6.6.14 Maximum of two float patient series and a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( p . f1 , p . f2 , 1.5 )
patient
value
1
1.5
2
2.11
3
1.5
6.6.15 Maximum of two string patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
6.6.16 Minimum of two string patient series
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
6.6.17 Minimum of two string patient series and a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( p . s1 , p . s2 , "e" )
patient
value
1
a
2
e
3
e
6.6.18 Maximum of two string patient series and a value
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( p . s1 , p . s2 , "e" )
patient
value
1
e
2
f
3
e
6.6.19 Maximum of two integers all a values
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
112
2001-01-01
2012-12-12
a
d
1.01
1.12
2
211
2021-01-01
f
2.11
3
returns the following patient series:
patient
value
1
3
2
3
3
3
6.7 Minimum and maximum aggregations across Event series
6.7.1 Maximum of two integer event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . i1 , e . i2 ) . maximum_for_patient ()
patient
value
1
112
2
211
3
6.7.2 Minimum of two integer event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . i1 , e . i2 ) . minimum_for_patient ()
patient
value
1
101
2
211
3
6.7.3 Minimum of two integer event series and a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . i1 , e . i2 , 150 ) . minimum_for_patient ()
patient
value
1
101
2
150
3
150
6.7.4 Maximum of two integer event series and a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . i1 , e . i2 , 150 ) . maximum_for_patient ()
patient
value
1
150
2
211
3
150
6.7.5 Minimum of two date event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . d1 , e . d2 ) . minimum_for_patient ()
patient
value
1
2001-01-01
2
2021-01-01
3
6.7.6 Maximum of two date event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . d1 , e . d2 ) . maximum_for_patient ()
patient
value
1
2012-12-12
2
2021-01-01
3
6.7.7 Minimum of two date event series and datetime a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . d1 , e . d2 , date ( 2015 , 5 , 5 )) . minimum_for_patient ()
patient
value
1
2001-01-01
2
2015-05-05
3
2015-05-05
6.7.8 Maximum of two date event series and datetime a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . d1 , e . d2 , date ( 2015 , 5 , 5 )) . maximum_for_patient ()
patient
value
1
2015-05-05
2
2021-01-01
3
2015-05-05
6.7.9 Minimum of two date event series and string a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . d1 , e . d2 , "2015-05-05" ) . minimum_for_patient ()
patient
value
1
2001-01-01
2
2015-05-05
3
2015-05-05
6.7.10 Maximum of two date event series and string a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . d1 , e . d2 , "2015-05-05" ) . maximum_for_patient ()
patient
value
1
2015-05-05
2
2021-01-01
3
2015-05-05
6.7.11 Maximum of two float event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . f1 , e . f2 ) . maximum_for_patient ()
patient
value
1
1.12
2
2.11
3
6.7.12 Minimum of two float event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . f1 , e . f2 ) . minimum_for_patient ()
patient
value
1
1.01
2
2.11
3
6.7.13 Minimum of two float event series and float a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . f1 , e . f2 , 1.5 ) . minimum_for_patient ()
patient
value
1
1.01
2
1.5
3
1.5
6.7.14 Maximum of two float event series and float a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . f1 , e . f2 , 1.5 ) . maximum_for_patient ()
patient
value
1
1.5
2
2.11
3
1.5
6.7.15 Minimum of two float event series and integer a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . f1 , e . f2 , 2 ) . minimum_for_patient ()
patient
value
1
1.01
2
2
3
2
6.7.16 Maximum of two float event series and integer a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . f1 , e . f2 , 2 ) . maximum_for_patient ()
patient
value
1
2
2
2.11
3
2
6.7.17 Maximum of two string event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . s1 , e . s2 ) . maximum_for_patient ()
6.7.18 Minimum of two string event series
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . s1 , e . s2 ) . minimum_for_patient ()
6.7.19 Minimum of two string event series and a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
minimum_of ( e . s1 , e . s2 , "e" ) . minimum_for_patient ()
patient
value
1
a
2
e
3
e
6.7.20 Maximum of two string event series and a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . s1 , e . s2 , "e" ) . maximum_for_patient ()
patient
value
1
e
2
f
3
e
6.7.21 Maximum of nested aggregate
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of (
e . s1 . count_distinct_for_patient (),
e . s2 . count_distinct_for_patient (),
)
patient
value
1
2
2
1
3
0
6.7.22 Maximum of nested aggregate and column and a value
This example makes use of an event-level table named e containing the following data:
patient
i1
i2
d1
d2
s1
s2
f1
f2
1
101
111
2001-01-01
2002-02-02
a
b
1.01
1.11
1
102
112
2011-11-11
2012-12-12
c
d
1.02
1.12
2
211
2021-01-01
f
2.11
3
maximum_of ( e . s1 . count_distinct_for_patient (), e . i1 , 1 ) . maximum_for_patient ()
patient
value
1
102
2
1
3
1
7 Operations on boolean series
7.1 Logical operations
7.1.1 Not
This example makes use of a patient-level table named p containing the following data:
returns the following patient series:
7.1.2 And
This example makes use of a patient-level table named p containing the following data:
patient
b1
b2
1
T
T
2
T
3
T
F
4
T
5
6
F
7
F
T
8
F
9
F
F
returns the following patient series:
patient
value
1
T
2
3
F
4
5
6
F
7
F
8
F
9
F
7.1.3 Or
This example makes use of a patient-level table named p containing the following data:
patient
b1
b2
1
T
T
2
T
3
T
F
4
T
5
6
F
7
F
T
8
F
9
F
F
returns the following patient series:
patient
value
1
T
2
T
3
T
4
T
5
6
7
T
8
9
F
8 Operations on integer series
8.1 Arithmetic operations without division
8.1.1 Negate
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
111
2
201
returns the following patient series:
8.1.2 Add
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
111
2
201
returns the following patient series:
8.1.3 Subtract
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
111
2
201
returns the following patient series:
8.1.4 Multiply
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
111
2
201
returns the following patient series:
8.1.5 Multiply with constant
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
111
2
201
returns the following patient series:
8.2 Comparison operations
8.2.1 Less than
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
201
2
201
201
3
301
201
4
201
returns the following patient series:
patient
value
1
T
2
F
3
F
4
8.2.2 Less than or equal to
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
201
2
201
201
3
301
201
4
201
returns the following patient series:
patient
value
1
T
2
T
3
F
4
8.2.3 Greater than
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
201
2
201
201
3
301
201
4
201
returns the following patient series:
patient
value
1
F
2
F
3
T
4
8.2.4 Greater than or equal to
This example makes use of a patient-level table named p containing the following data:
patient
i1
i2
1
101
201
2
201
201
3
301
201
4
201
returns the following patient series:
patient
value
1
F
2
T
3
T
4
9 Operations on all series containing codes
9.1 Testing for containment using codes
9.1.1 Is in
This example makes use of a patient-level table named p containing the following data:
patient
c1
1
123000
2
456000
3
789000
4
p . c1 . is_in ([ SNOMEDCTCode ( "123000" ), SNOMEDCTCode ( "789000" )])
patient
value
1
T
2
F
3
T
4
9.1.2 Is not in
This example makes use of a patient-level table named p containing the following data:
patient
c1
1
123000
2
456000
3
789000
4
p . c1 . is_not_in ([ SNOMEDCTCode ( "123000" ), SNOMEDCTCode ( "789000" )])
patient
value
1
F
2
T
3
F
4
9.1.3 Is in codelist csv
This example makes use of a patient-level table named p containing the following data:
patient
c1
1
123000
2
456000
3
789000
4
returns the following patient series:
patient
value
1
T
2
F
3
T
4
9.2 Test mapping codes to categories using a categorised codelist
9.2.1 Map codes to categories
This example makes use of a patient-level table named p containing the following data:
patient
c1
1
123000
2
456000
3
789000
4
p . c1 . to_category ( codelist )
patient
value
1
cat1
2
3
cat2
4
10 Logical case expressions
10.1 Logical case expressions
10.1.1 Case with expression
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
6
2
7
3
8
4
9
5
case (
when ( p . i1 < 8 ) . then ( p . i1 ),
when ( p . i1 > 8 ) . then ( 100 ),
)
patient
value
1
6
2
7
3
4
100
5
10.1.2 Case with default
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
6
2
7
3
8
4
9
5
case (
when ( p . i1 < 8 ) . then ( p . i1 ),
when ( p . i1 > 8 ) . then ( 100 ),
otherwise = 0 ,
)
patient
value
1
6
2
7
3
0
4
100
5
0
10.1.3 Case with boolean column
This example makes use of a patient-level table named p containing the following data:
patient
i1
b1
1
6
T
2
7
F
3
9
F
4
case (
when ( p . b1 ) . then ( p . i1 ),
when ( p . i1 > 8 ) . then ( 100 ),
)
patient
value
1
6
2
3
100
4
10.1.4 Case with explicit null
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
6
2
7
3
8
4
9
5
case (
when ( p . i1 < 8 ) . then ( None ),
when ( p . i1 > 8 ) . then ( 100 ),
otherwise = 200 ,
)
patient
value
1
2
3
200
4
100
5
200
10.2 Case expressions with single condition
10.2.1 When with expression
This example makes use of a patient-level table named p containing the following data:
when ( p . i1 < 8 ) . then ( p . i1 ) . otherwise ( 100 )
patient
value
1
6
2
7
3
100
4
100
10.2.2 When with boolean column
This example makes use of a patient-level table named p containing the following data:
patient
i1
b1
1
6
T
2
7
F
3
when ( p . b1 ) . then ( p . i1 ) . otherwise ( 100 )
patient
value
1
6
2
100
3
100
11 Operations on all series containing dates
11.1 Operations which apply to all series containing dates
11.1.1 Get year
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
1990-01-02
100
2
2000-03-04
200
3
returns the following patient series:
patient
value
1
1990
2
2000
3
11.1.2 Get month
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
1990-01-02
100
2
2000-03-04
200
3
returns the following patient series:
11.1.3 Get day
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
1990-01-02
100
2
2000-03-04
200
3
returns the following patient series:
11.1.4 To first of year
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
2000-12-15
3
2020-12-31
4
returns the following patient series:
patient
value
1
1990-01-01
2
2000-01-01
3
2020-01-01
4
11.1.5 To first of month
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
1990-01-31
3
returns the following patient series:
patient
value
1
1990-01-01
2
1990-01-01
3
11.1.6 Add days
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
1990-01-02
100
2
2000-03-04
200
3
returns the following patient series:
patient
value
1
1990-04-12
2
2000-09-20
3
11.1.7 Subtract days
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
1990-01-02
100
2
2000-03-04
200
3
returns the following patient series:
patient
value
1
1989-09-24
2
1999-08-17
3
11.1.8 Add months
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
2003-01-29
1
2
2004-01-29
1
3
2003-01-31
1
4
2004-01-31
1
5
2004-03-31
-1
6
2000-10-31
11
7
2000-10-31
-11
returns the following patient series:
patient
value
1
2003-03-01
2
2004-02-29
3
2003-03-01
4
2004-03-01
5
2004-03-01
6
2001-10-01
7
1999-12-01
11.1.9 Add years
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
2000-06-15
5
2
2000-06-15
-5
3
2004-02-29
1
4
2004-02-29
-1
5
2004-02-29
4
6
2004-02-29
-4
7
2003-03-01
1
returns the following patient series:
patient
value
1
2005-06-15
2
1995-06-15
3
2005-03-01
4
2003-03-01
5
2008-02-29
6
2000-02-29
7
2004-03-01
11.1.10 Add date to duration
This example makes use of a patient-level table named p containing the following data:
patient
d1
i1
1
1990-01-02
100
2
2000-03-04
200
3
returns the following patient series:
patient
value
1
1990-04-12
2
2000-06-12
3
11.1.11 Difference between dates in years
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
2020-02-29
2
2020-02-28
3
2019-01-01
4
2021-03-01
5
2023-01-01
6
( date ( 2021 , 2 , 28 ) - p . d1 ) . years
patient
value
1
0
2
1
3
2
4
-1
5
-2
6
11.1.12 Difference between dates in months
This example makes use of a patient-level table named p containing the following data:
patient
d1
d2
1
2000-02-28
2000-01-30
2
2000-03-01
2000-01-30
3
2000-03-28
2000-02-28
4
2000-03-30
2000-01-30
5
2000-02-27
2000-01-30
6
2000-01-27
2000-01-30
7
1999-12-26
2000-01-27
8
2005-02-28
2004-02-29
9
2010-01-01
2000-01-01
10
2000-01-01
returns the following patient series:
patient
value
1
0
2
1
3
1
4
2
5
0
6
-1
7
-2
8
11
9
120
10
11.1.13 Difference between dates in days
This example makes use of a patient-level table named p containing the following data:
patient
d1
d2
1
2000-01-01
2000-01-01
2
2000-03-01
2000-01-01
3
2001-03-01
2001-01-01
4
1999-12-31
2001-01-01
returns the following patient series:
patient
value
1
0
2
60
3
59
4
-367
11.1.14 Reversed date differences
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-30
2
1970-01-15
( p . d1 - "1980-01-20" ) . years
11.1.15 Add days to static date
This example makes use of a patient-level table named p containing the following data:
date ( 2000 , 1 , 1 ) + days ( p . i1 )
patient
value
1
2000-01-11
2
1999-12-22
11.1.16 Add months to static date
This example makes use of a patient-level table named p containing the following data:
date ( 2000 , 1 , 1 ) + months ( p . i1 )
patient
value
1
2000-11-01
2
1999-03-01
11.1.17 Add years to static date
This example makes use of a patient-level table named p containing the following data:
date ( 2000 , 1 , 1 ) + years ( p . i1 )
patient
value
1
2010-01-01
2
1990-01-01
11.2 Comparisons involving dates
11.2.1 Is before
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
2000-01-01
3
2010-01-01
4
p . d1 . is_before ( date ( 2000 , 1 , 1 ))
patient
value
1
T
2
F
3
F
4
11.2.2 Is on or before
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
2000-01-01
3
2010-01-01
4
p . d1 . is_on_or_before ( date ( 2000 , 1 , 1 ))
patient
value
1
T
2
T
3
F
4
11.2.3 Is after
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
2000-01-01
3
2010-01-01
4
p . d1 . is_after ( date ( 2000 , 1 , 1 ))
patient
value
1
F
2
F
3
T
4
11.2.4 Is on or after
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
2000-01-01
3
2010-01-01
4
p . d1 . is_on_or_after ( date ( 2000 , 1 , 1 ))
patient
value
1
F
2
T
3
T
4
11.2.5 Is in
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
2000-01-01
3
2010-01-01
4
p . d1 . is_in ([ date ( 2010 , 1 , 1 ), date ( 1900 , 1 , 1 )])
patient
value
1
F
2
F
3
T
4
11.2.6 Is not in
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
1990-01-01
2
2000-01-01
3
2010-01-01
4
p . d1 . is_not_in ([ date ( 2010 , 1 , 1 ), date ( 1900 , 1 , 1 )])
patient
value
1
T
2
T
3
F
4
11.2.7 Is between but not on
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
2010-01-01
2
2010-01-02
3
2010-01-03
4
2010-01-04
5
2010-01-05
6
p . d1 . is_between_but_not_on ( date ( 2010 , 1 , 2 ), date ( 2010 , 1 , 4 ))
patient
value
1
F
2
F
3
T
4
F
5
F
6
11.2.8 Is on or between
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
2010-01-01
2
2010-01-02
3
2010-01-03
4
2010-01-04
5
2010-01-05
6
p . d1 . is_on_or_between ( date ( 2010 , 1 , 2 ), date ( 2010 , 1 , 4 ))
patient
value
1
F
2
T
3
T
4
T
5
F
6
11.2.9 Is during
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
2010-01-01
2
2010-01-02
3
2010-01-03
4
2010-01-04
5
2010-01-05
6
returns the following patient series:
patient
value
1
F
2
T
3
T
4
T
5
F
6
11.2.10 Is on or between backwards
This example makes use of a patient-level table named p containing the following data:
patient
d1
1
2010-01-01
2
2010-01-02
3
2010-01-03
4
2010-01-04
5
2010-01-05
6
p . d1 . is_on_or_between ( date ( 2010 , 1 , 4 ), date ( 2010 , 1 , 2 ))
patient
value
1
F
2
F
3
F
4
F
5
F
6
11.3 Types usable in comparisons involving dates
11.3.1 Accepts python date object
This example makes use of a patient-level table named p containing the following data:
patient
d1
d2
1
1990-01-01
1980-01-01
2
2000-01-01
1980-01-01
3
2010-01-01
2020-01-01
4
2020-01-01
p . d1 . is_before ( datetime . date ( 2000 , 1 , 20 ))
patient
value
1
T
2
T
3
F
4
This example makes use of a patient-level table named p containing the following data:
patient
d1
d2
1
1990-01-01
1980-01-01
2
2000-01-01
1980-01-01
3
2010-01-01
2020-01-01
4
2020-01-01
p . d1 . is_before ( "2000-01-20" )
patient
value
1
T
2
T
3
F
4
11.3.3 Accepts another date series
This example makes use of a patient-level table named p containing the following data:
patient
d1
d2
1
1990-01-01
1980-01-01
2
2000-01-01
1980-01-01
3
2010-01-01
2020-01-01
4
2020-01-01
returns the following patient series:
patient
value
1
F
2
F
3
T
4
11.4 Aggregations which apply to all series containing dates
11.4.1 Count episodes
This example makes use of an event-level table named e containing the following data:
patient
d1
1
2020-01-01
1
2020-01-04
1
2020-01-06
1
2020-01-10
1
2020-01-12
2
2020-01-01
3
4
2020-01-10
4
4
4
2020-01-01
e . d1 . count_episodes_for_patient ( days ( 3 ))
patient
value
1
2
2
1
3
0
4
2
12 Operations on all series containing strings
12.1 Testing whether one string contains another string
12.1.1 Contains fixed value
This example makes use of a patient-level table named p containing the following data:
patient
s1
1
ab
2
ab12
3
12ab
4
12ab45
5
a b
6
AB
7
returns the following patient series:
patient
value
1
T
2
T
3
T
4
T
5
F
6
F
7
12.1.2 Contains fixed value with special characters
This example makes use of a patient-level table named p containing the following data:
patient
s1
1
/a%b_
2
/ab_
3
/a%bc
4
a%b_
returns the following patient series:
patient
value
1
T
2
F
3
F
4
F
12.1.3 Contains value from column
This example makes use of a patient-level table named p containing the following data:
patient
s1
s2
1
ab
ab
2
cd12
cd
3
12ef
ef
4
12gh45
gh
5
i j
ij
6
KL
kl
7
mn
8
ab
returns the following patient series:
patient
value
1
T
2
T
3
T
4
T
5
F
6
F
7
8
12.1.4 Contains value from column with special characters
This example makes use of a patient-level table named p containing the following data:
patient
s1
s2
1
/a%b_
/a%b_
2
/ab_
/a%b_
3
/a%bc
/a%b_
4
a%b_
/a%b_
returns the following patient series:
patient
value
1
T
2
F
3
F
4
F
13 Defining the dataset population
13.1 Defining a population
define_population is used to limit the population from which data is extracted.
13.1.1 Population with single table
Extract a column from a patient table after limiting the population by another column.
This example makes use of a patient-level table named p containing the following data:
patient
b1
i1
1
F
10
2
T
20
3
F
30
p . i1
define_population ( ~ p . b1 )
13.1.2 Population with multiple tables
Limit the patient population by a column in one table, and return values from another
table.
This example makes use of a patient-level table named p and an event-level table named e containing the following data:
patient
i1
1
101
1
102
3
301
4
401
e . exists_for_patient ()
define_population ( p . i1 > 0 )
13.1.3 Case with case expression
Limit the patient population by a case expression.
This example makes use of a patient-level table named p containing the following data:
p . i1
define_population (
case (
when ( p . i1 <= 8 ) . then ( True ),
when ( p . i1 > 8 ) . then ( False ),
)
)
14 Defining a table using inline data
14.1 Defining a table using inline data
14.1.1 Table from rows
This example makes use of a patient-level table named p containing the following data:
patient
i1
1
10
2
20
3
30
returns the following patient series:
patient
value
1
110
2
3
330